MRIQC: individual T1w report

Summary

Subject ID: 049_ControlPre.
Date and time: 2018-05-07, 00:40.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.3524353803669741
cnr			3.6540942299942625
efc			0.6106898618293188
fber			76.42745971679688
fwhm	avg		3.7874800000000004
fwhm	x		3.57933
fwhm	y		3.97081
fwhm	z		3.8123
icvs	csf		0.1827722311299788
icvs	gm		0.478570190076074
icvs	wm		0.3386575787939472
inu	med		1.245926856994629
inu	range		0.4309226155281065
qi	1		0.0
qi	2		0.0008048662561922488
rpve	csf		28.988402259640853
rpve	gm		12.304238537707668
rpve	wm		18.838834526304943
size	x		180
size	y		256
size	z		256
snr	csf		2.5260750908850014
snr	gm		10.537226563400887
snr	total		9.289832969686708
snr	wm		14.806197254774236
snrd	csf		10.495957547710535
snrd	gm		21.451199328758143
snrd	total		21.645714222103333
snrd	wm		32.98998578984133
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	3.9457714839509563
summary	bg	mad	19.858915328979492
summary	bg	mean	67.8701400756836
summary	bg	median	60.936119079589844
summary	bg	n	2691006.0
summary	bg	p05	36.63618183135986
summary	bg	p95	125.07433700561523
summary	bg	stdv	28.157442092895508
summary	csf	k	0.26060896065079486
summary	csf	mad	132.62725830078125
summary	csf	mean	324.0947570800781
summary	csf	median	318.16021728515625
summary	csf	n	8622.0
summary	csf	p05	132.0429275512695
summary	csf	p95	533.5937805175781
summary	csf	stdv	125.943115234375
summary	gm	k	0.09351224605382935
summary	gm	mad	60.969482421875
summary	gm	mean	650.6314086914062
summary	gm	median	650.2425537109375
summary	gm	n	31597.0
summary	gm	p05	550.1140747070312
summary	gm	p95	753.0435180664062
summary	gm	stdv	61.70810317993164
summary	wm	k	0.6858002697110774
summary	wm	mad	62.3022346496582
summary	wm	mean	1002.2325439453125
summary	wm	median	1000.013671875
summary	wm	n	155829.0
summary	wm	p05	894.0535888671875
summary	wm	p95	1116.314208984375
summary	wm	stdv	67.53999328613281
tpm	overlap	csf	0.1887534260749817
tpm	overlap	gm	0.5261802673339844
tpm	overlap	wm	0.5169028639793396
wm2max			0.5861497633118694

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	11337875103bf826f54b1d3ac0ff4b58
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.