MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.3524353803669741
cnr3.6540942299942625
efc0.6106898618293188
fber76.42745971679688
fwhmavg3.7874800000000004
fwhmx3.57933
fwhmy3.97081
fwhmz3.8123
icvscsf0.1827722311299788
icvsgm0.478570190076074
icvswm0.3386575787939472
inumed1.245926856994629
inurange0.4309226155281065
qi10.0
qi20.0008048662561922488
rpvecsf28.988402259640853
rpvegm12.304238537707668
rpvewm18.838834526304943
sizex180
sizey256
sizez256
snrcsf2.5260750908850014
snrgm10.537226563400887
snrtotal9.289832969686708
snrwm14.806197254774236
snrdcsf10.495957547710535
snrdgm21.451199328758143
snrdtotal21.645714222103333
snrdwm32.98998578984133
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk3.9457714839509563
summarybgmad19.858915328979492
summarybgmean67.8701400756836
summarybgmedian60.936119079589844
summarybgn2691006.0
summarybgp0536.63618183135986
summarybgp95125.07433700561523
summarybgstdv28.157442092895508
summarycsfk0.26060896065079486
summarycsfmad132.62725830078125
summarycsfmean324.0947570800781
summarycsfmedian318.16021728515625
summarycsfn8622.0
summarycsfp05132.0429275512695
summarycsfp95533.5937805175781
summarycsfstdv125.943115234375
summarygmk0.09351224605382935
summarygmmad60.969482421875
summarygmmean650.6314086914062
summarygmmedian650.2425537109375
summarygmn31597.0
summarygmp05550.1140747070312
summarygmp95753.0435180664062
summarygmstdv61.70810317993164
summarywmk0.6858002697110774
summarywmmad62.3022346496582
summarywmmean1002.2325439453125
summarywmmedian1000.013671875
summarywmn155829.0
summarywmp05894.0535888671875
summarywmp951116.314208984375
summarywmstdv67.53999328613281
tpmoverlapcsf0.1887534260749817
tpmoverlapgm0.5261802673339844
tpmoverlapwm0.5169028639793396
wm2max0.5861497633118694

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum11337875103bf826f54b1d3ac0ff4b58
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.